PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100522.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 287aa    MW: 31821.8 Da    PI: 7.1586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100522.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003393115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k F ++  L  H++ H
  XP_010100522.1  93 FECQYCFKEFANSQALGGHQNAH 115
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.38E-690120No hitNo description
Gene3DG3DSA:3.30.160.603.1E-491119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40693120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAKDALSHLH PSCDEEHDGH SSGSCIEKKL KLFGFELNPC KINNNIDHET SSLKGGGSSA  60
ELGDESVNSS NSVPPKEITI KSSPDHINHD RKFECQYCFK EFANSQALGG HQNAHKKERM  120
KKKRLQLQAR KASLSYYLQP FQNSLGFSYQ YNSGSNTTST TTPPMLFDNY YSSSYNASDL  180
TFHDESQQIS FNPFEYADHH NSSQLSNSNS WYSSPTNYDN YNYTPSIQET CKFTLTTHAS  240
DNMRSGGANN GSSVIFKPSP KQSCKSLDLQ LGLGFQSKIA SSSPSGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4472392e-31AM447239.1 Vitis vinifera contig VV78X242690.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100522.10.0Zinc finger protein 5
TrEMBLW9RNJ70.0W9RNJ7_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.15e-16zinc finger protein 5